Package index • DOtools

Package overview

DOtools: DOtools: A Toolkit for scRNA Data Analysis

Preprocessing

DO.CellBender(): DO.CellBender

DO.Import(): DO.Import

DO.Integration(): DO.Integration SCE object integration directly

DO.scVI(): DO.scVI

DO.Correlation(): DO Correlation Plot for visualizing similarity between categories

Downstream processing

DO.CellTypist(): DO Celltypist

DO.FullRecluster(): DO.FullRecluster

DO.TransferLabel(): DO.TransferLabel

DO.enrichR(): DO.enrichR

DO.MultiDGE(): DO.MultiDGE

scRNA plotting

DO.BarplotClustert(): SEM Graph with t test on cluster level

DO.BarplotWilcox(): SEM Graph with wilcox test on single cell level

DO.VlnPlot(): Violin Graph with wilcox test on single cell level

DO.BoxPlot(): Box Graph with wilcox test on single cell level

DO.Dotplot(): DO Dot plot

DO.CellComposition(): DO CellComposition

DO.SplitBarGSEA(): DO Bar plot for GSEA df result

DO.Heatmap(): DO Heatmap of the mean expression of genes across a groups

Utils

DO.UMAP(): DO.UMAP

DO.Subset(): DO.Subset

DO.DietSCE(): Remove Layers from Seurat or SCE Object by Pattern

DO.PyEnv(): DO.PyEnv