DO.PyEnv — DO.PyEnv • DOtools

Sets up or connects to a conda Python environment for use with DOtools. If no environment path is provided, it will create one at ~/.venv/DOtools and install required Python packages: scvi-tools, celltypist, and scanpro.

Usage

DO.PyEnv(conda_path = NULL)

Arguments

conda_path: character string specifying the path to an existing or new conda environment.

Value

None

Examples

# Automatically create DOtools environment at ~/.venv/DOtools if it doesn't exist
DO.PyEnv()
#> 2025-07-26 09:21:16 - Using existing conda environment at: /home/mariano/.venv/DOtools
#> 2025-07-26 09:21:16 - Python packages ready for DOtools!

# Use an existing conda environment at a custom location
DO.PyEnv(conda_path = "~/miniconda3/envs/my_dotools_env")
#> 2025-07-26 09:21:16 - Creating conda environment for DOtools
#> 2025-07-26 09:22:39 - Python packages ready for DOtools!