Overview
DOtools is a user-friendly R package designed to streamline common workflows in single-cell RNA sequencing (scRNA-seq) data analysis using the Seurat ecosystem and third-party tools such as scVI, CellTypist, and CellBender. It provides high-level wrappers and visualisation utilities to help efficiently preprocess, analyze, and interpret single-cell data.
Installation
DOtools is currently available through github. To install the package, start R and run:
install.packages("devtools") # if not installed already
devtools::install_github("MarianoRuzJurado/DOtools")Python package
If you prefer python over R for data analysis, we also provide a python version of the DOtools package. Please refer for the python version to: DOtools_py
Contribution Guidelines
Raising up an issue in this Github repository might be the fastest way of submitting suggestions and bugs. Alternatively you can write an email: ruzjurado@med.uni-frankfurt.de