DO.TransferLabel

Transfers cell-type annotations from a re-annotated subset of a Seurat or SCE object back to the full Seurat or SCE object. This is useful when clusters have been refined or re-labeled in a subset and need to be reflected in the original object.

Usage

DO.TransferLabel(sce_object, Subset_obj, annotation_column, subset_annotation)

Arguments

sce_object

Seurat or SCE object with annotation in meta.data

Subset_obj

subsetted Seurat or SCE object with re-annotated clusters

annotation_column

column name in meta.data with annotation

subset_annotation

column name in meta.data with annotation in the subsetted object

Value

Seurat or SCE Object with transfered labels

Examples

sce_data <- readRDS(system.file("extdata", "sce_data.rds", package = "DOtools"))

sce_data <- DO.TransferLabel(sce_data,
                            sce_data,
                           annotation_column="annotation",
                           subset_annotation="annotation"
                          )